Bacteria vs viruses: space alters their evolutionary 'arms race'

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 NASA on The Commons, Flickr (CC0, https://creativecommons.org/publicdomain/zero/1.0/)
NASA on The Commons, Flickr (CC0, https://creativecommons.org/publicdomain/zero/1.0/)

Near-weightless conditions can mutate genes and change the physical structure of bacteria and phages (viruses that infect bacteria), altering regular interactions, according to US scientists. Bacteria and phages exist in an evolutionary 'arms race', where bacteria evolve defenses against phages which in turn evolve ways to defeat them. Researchers tested bacteria and phage interactions at four different time points, with one experiment in near-weightless conditions aboard the International Space Station compared with an experiment on Earth. They say phages were slower to infect bacteria in space, but had succeeded by the longest time point. Space-driven DNA mutations appeared to boost bacterial defenses, but also helped phages bind to and infect the bacteria. Notably, they found phages that had accumulated genetic differences in space were more effective than Earth-bound phages at attaking a usually resistant bacterial strain from Earth. The team says this finding has potential implications in the fight against antibiotic resistance back here on terra firma.

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From: PLOS

Aboard the International Space Station, viruses and bacteria show atypical interplay

Bacteria-infecting viruses and their hosts accumulate distinctive mutations in near-weightlessness

In a new study, terrestrial bacteria-infecting viruses were still able to infect their E. coli hosts in near-weightless “microgravity” conditions aboard the International Space Station, but the dynamics of virus-bacteria interactions differed from those observed on Earth. Phil Huss of the University of Wisconsin-Madison, U.S.A., and colleagues present these findings January 13th in the open-access journal PLOS Biology.

Interactions between phages—viruses that infect bacteria—and their hosts play an integral role in microbial ecosystems. Often described as being in an evolutionary “arms race,” bacteria can evolve defenses against phages, while phages develop new ways to thwart defenses. While virus-bacteria interactions have been studied extensively on Earth, microgravity conditions alter bacterial physiology and the physics of virus-bacteria collisions, disrupting typical interactions.

However, few studies have explored the specifics of how phage-bacteria dynamics differ in microgravity. To address that gap, Huss and colleagues compared two sets of bacterial E. coli samples infected with a phage known as T7—one set incubated on Earth and the other aboard the International Space Station.

Analysis of the space-station samples showed that, after an initial delay, the T7 phage successfully infected the E. coli. However, whole-genome sequencing revealed marked differences in both bacterial and viral genetic mutations between the Earth samples versus the microgravity samples.

The space-station phages gradually accumulated specific mutations that could boost phage infectivity or their ability to bind receptors on bacterial cells. Meanwhile, the space-station E. coli accumulated mutations that could protect against phages and enhance survival success in near-weightless conditions.

The researchers then applied a high-throughput technique known as deep mutational scanning to more closely examine changes in the T7 receptor binding protein, which plays a key role in infection, revealing further significant differences between microgravity versus Earth conditions. Additional experiments on Earth linked these microgravity-associated changes in the receptor binding protein to increased activity against E. coli strains that cause urinary tract infections in humans and are normally resistant to T7.

Overall, this study highlights the potential for phage research aboard the ISS to reveal new insights into microbial adaption, with potential relevance to both space exploration and human health.

The authors add, “Space fundamentally changes how phages and bacteria interact: infection is slowed, and both organisms evolve along a different trajectory than they do on Earth. By studying those space-driven adaptations, we identified new biological insights that allowed us to engineer phages with far superior activity against drug-resistant pathogens back on Earth.”

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PLOS Biology
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Organisation/s: University of Wisconsin-Madison
Funder: This work was supported by the Defense Threat Reduction Agency. (Grant HDTRA1-16-1-0049) to S.R. C.C. was supported by a graduate training scholarship from the Anandamahidol Foundation (Thailand). The sponsors or funders did not play any role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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